jQuery is not defined in admin panel

Sometimes after update (but not sure) or after the project has been deployed (almost sure) the admin panel console shows, that jQuery is not defined. What might cause this problem.

Under git we have all the files under the user/ directory.

Found: there was a missing line under system.yaml
assets:
collections:
jquery: ‘system://assets/jquery/jquery-2.1.4.min.js’